Work packages: An Overview
Work Package
1 - Targets - all non toxic sites- starts
with a whole range of computational activities including Systems Biology
research. This package brings together the computational strengths and
reinforces the concepts of open source movement by participation of academia,
institutions and industries with strong inclination towards Open Source. It
also includes setting up of facilities and networks, and the OSDD Portal.
Work Package 2 -
Expression of targets- deals with experimental expression of protein targets.
Success of this work package is an important component and this work package
brings in the true concept of sharing experimental reagents and chemicals in
open source.
Work Package 3 - Screen
development- involves screening of targets discovered using large chemical
libraries in order to identify the inhibitors with potential to become drugs.
This package implementation may call for the participation of Contract Research
Organizations as well. Some assays may be developed using smart innovative
molecules.
Work Package 4 - in
silico docking and identification of a library of chemicals for specific
screening -can be viewed as another very important computational aspect with
its aim focusing on filtering or forestalling molecules with potential
toxicity.
Work Package 5 -
Micro array gene expression for human cells and tissues with the best
inhibitors- Modern genomics technologies of microarray would be used to build
transcript profile and linked with Work Package 4 as an overlap to check the
mechanisms of the best inhibitors on the host.
Work Package 6 - Lead
optimization on the non-toxic hits - which is an essential module of the drug
discovery program.
Work Package 7 -
Medicinal chemistry - Synthesis of analogues which have nano-molecular binding
to the target but do not alter the expression profile of host cell significantly
compared to the native un-intervened state.
Work Package 8 - Proteomics based lead affinity column to check
for human cellular protein binding - to filter the potent lead with minimum
binding.
Work Package 9 -
Pre-Clinical Toxicity of the Lead Compounds- in order to develop a
pharmacological profile of the investigational drug
Work Package 10 -
Clinical Development of New Molecular Entities - would look into the evaluation
of new molecules so as to establish its safety, tolerability and efficacy and
would be aimed at faster and more cost-effective development of the new drugs.
All of these WPs taken together shall steer this endeavor firmly towards
affordable drug development.
Contributions
In OSDD,
the entire process of drug discovery would be divided into problems open for
the entire community to contribute. An idea, software, data, an article or
molecule(s), etc that help in expediting the process of drug discovery
will be treated as a contribution.
Challenges: Challenges are well-defined
problems posted on the website. Anyone can solve these problems. Each of
the solutions to these problems would be peer-reviewed. Appropriate rewards may
be announced for solving them, similar to the incentive model.
Rewards
A micro-attribution
system will be followed for all contributions. Based on the peer-review
contributors would get rewards in form of credit points. Each activity or a
defined problem will have a per-determined set of points or rewards associated
to it. All probable prospective activity would be given prior points in
terms of weightage, for example, lead optimization would have higher weightage
than protein expression. The points can be accrued over time for all the
contributions to the project. Based on the points accrued by the contributors
they would be awarded four levels of Memberships cards (Blue, Silver, Gold and
Platinum). Each type of card entails a certain sets of rights, privileges and
responsibilities in the entire process.
Universities, students, scientists – Anyone who wants to solve challenging
problems in drug discovery or are ready to share their time/resources are
welcome to participate in this initiative. For contributing to OSDD you will
need a login followed by acceptance of “terms and conditions”. You may
contribute in your area of expertise that may range from in silico target
identification to protein purification to clinical trials. Citations should be
provided wherever available.
The open source drug
discovery model will exploit the system of monetary and non-monetary rewards
that is already part of the scientific establishment—using the prospects of
scientific progress, career advancement, and humanitarianism to engage
biomedical researchers.