Publications, Presentations and Resources - Open Source Drug Discovery (OSDD) Network | Council of Scientific and Industrial Research , India

Publications, Presentations and Resources

Scientific Publications

Periwal V, Kishtapuram S, Open Source Drug Discovery Consortium, Scaria V; Computational models for in-vitro anti-tubercular activity of molecules based on high-throughput chemical biology screening datasets, BMC Pharmacology. (2011). In press

Singh H, Chauhan JS, Gromiha MM; Open Source Drug Discovery Consortium, Raghava GP. ccPDB: compilation and creation of data sets from Protein Data Bank.Nucleic Acids Res. 2012 Jan;40(Database issue):D486-9. Epub 2011 Dec 1. PubMed PMID: 22139939; PubMed Central PMCID: PMC3245168.

Periwal V, K.R Jinuraj, Open Source Drug Discovery Consortium, Jaleel UCA, Scaria V. Predictive models for anti-tubercular molecules using machine learning on high throughput biological screening data sets. BMC Research Notes. 2011 Nov 18;4(1):504. PubMed PMID: 22099929

Anand P, Sankaran S, Mukherjee S, Yeturu K, Laskowski R, Bhardwaj A, Bhagavat R; OSDD Consortium, Brahmachari SK, Chandra N. Structural Annotation of Mycobacterium tuberculosis Proteome. PLoS One. 2011;6(10):e27044. Epub 2011 Oct 31. PubMed PMID: 22073123; PubMed Central PMCID: PMC3205055.

Bhardwaj A, Scaria V, Raghava GP, Lynn AM, Chandra N, Banerjee S, Raghunandanan MV, Pandey V, Taneja B, Yadav J, Dash D, Bhattacharya J, Misra A, Kumar A, Ramachandran S, Thomas Z, Open Source Drug Discovery Consortium, Brahmachari SK. Open source drug discovery- A new paradigm of collaborative research in tuberculosis drug development. Tuberculosis (Edinb). 2011 Sep;91(5):479-86. Epub 2011 Jul 22. PubMed PMID: 21782516.

Maganti L, Das SK, Mascarenhas NM, Ghoshal N.Deciphering the Structural Requirements of Nucleoside Bisubstrate Analogues for Inhibition of MbtA in Mycobacterium tuberculosis: A FB-QSAR Study and Combinatorial Library Generation for Identifying Potential Hits. Molecular Informatics, October 2011, Volume 30, Issue 10, pages 863–872

Bhardwaj A, Scaria v, Patra D, Open Source Drug Discovery Consortium. Open source drug discovery: a global collaborative drug discovery model for tuberculosis. Science and culture, January-February, 2011, vol. 77, nos. 1–2, 22-26.

Bhat AG, Vashisht R, Chandra N. Modeling metabolic adjustment in Mycobacterium tuberculosis upon treatment with Isoniazid. Systems and Synthetic Biology. 2011 Volume 4, Number 4, 299-309.

Mishra NK, Agarwal S, Raghava GP. Prediction of cytochrome P450 isoform responsible for metabolizing a drug molecule. BMC Pharmacol. 2010 Jul 16;10:8. PubMed PMID: 20637097; PubMed Central PMCID: PMC2912882.

Mathew R, Kruthiventi AK, Prasad JV, Kumar SP, Srinu G, Chatterji D. Inhibition of mycobacterial growth by plumbagin derivatives. Chem Biol Drug Des. 2010 Jul;76(1):34-42. Epub 2010 May 4. PubMed PMID: 20456370.

Garg A, Tewari R, Raghava GP. KiDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials. BMC Bioinformatics. 2010 Mar 11;11:125. PubMed PMID: 20222969; PubMed Central PMCID: PMC2841597

Bhardwaj A, Bhartiya D, Kumar N; Open Source Drug Discovery Consortium, Scaria V. TBrowse: an integrative genomics map of Mycobacterium tuberculosis. Tuberculosis (Edinb). 2009 Sep;89(5):386-7. Epub 2009 Aug 14. PubMed PMID: 19683474.

Sharma S, Kumar M, Sharma S, Nargotra A, Koul S, Khan IA. Piperine as an inhibitor of Rv1258c, a putative multidrug efflux pump of Mycobacterium tuberculosis. J Antimicrob Chemother. 2010 Aug;65(8):1694-701. Epub 2010 Jun 4. PubMed PMID: 20525733.

Publications About OSDD

OSDD Chemistry OUTREACH Program (OSDDChem) : Current Science Correspondence, Dr Tushar Kanti Chakraborty,Nov 2011 101(10)

Hiroaki Kitano, Samik Ghosh & Yukiko Matsuoka. Social engineering for virtual 'big science' in systems biology. Nature Chemical Biology 7, 323–326 (2011) doi:10.1038/nchembio.574 Published online 17 May 2011.

Towards new business models for R&D for novel antibiotics. Drug Resist Updat. 2011 Apr;14(2):88-94. Epub 2011 Mar 25.

Geek Nation: How Indian Science Is Taking Over the World; Angela Saini , 2011 ; 288 pages.

Concise General Knowledge Manual; Edgar Thorpe, Showick thorpe , 2011.

Institute of Medicine: Extending the Spectrum of Precompetitive Collaboration in Oncology in Oncology research; Margie (CON) Patlak, Sharyl J. (CON) Nass, 2010; 112 pages.

B Munos. Can Open-Source Drug R&D Repower Pharmaceutical Innovation? Clinical Pharmacology & Therapeutics 87, 534-536 (May 2010) | doi:10.1038/ clpt.2010.26.

Incentives for Global Public Health: Patent Law and Access to Essential Medicines; Open Source drug discovery: a revolutionary paradigm or a Utopian model? Krishna Ravi Srinivas, 2010; 263 pages.

S&T Strategies of Six Countries: Implications for the United States; Committee on Global Science and Technology Strategies and Their Effect on U.S. National Security, National Research Council , 2010; 126 pages.

India: a reference annual; India. Ministry of Information and Broadcasting; 2010.

Institute of the Medicine of National Academics: The U.S. Commitment to Global Health. Institute of Medicine of the National Academics, 2009.

India Takes an Open Source Approach to Drug Discovery. Cell, Volume 133, Issue 2, 201-203, 18 April 2008

Science & Technology For Upscl; Singh, 2007; 36 pages.

Blogs About OSDD :

Geetha.S, OSDD-Redefining IPR in Open Source Innovations;December 7,2011;Link http://www.open-designism.com/profiles/blogs/osdd-redefining-ipr-in-open-source-innovations.

Geetha.S, Garuda Grid - Helping Cross Computational Barricades; November 9,2011;Link http://scienceopenscience.blogspot.com/2011/11/04112011-further-strengthening-mou-was.html

Geetha.S; “Cloning and expression of selected intraphagosomal expressed genes of Mycobacterium tuberculosis” - OSDD Project at Miranda House; October 4,2011;Link :http://scienceopenscience.blogspot.com/2011/10/cloning-and-expression-of-selected.html

Jaimon Joseph, A Facebook for Labcoats; September 23,2011; Link : http://ibnlive.in.com/blogs/jaimonjoseph/326/62731/a-facebook-for-labcoats.html

The MedGuru, your Helath first; TB drug: Open Source Drug Discovery project attracts private firms; POSTED Fri, 04/15/2011; POSTED BY Varma.gbsnp; Link: http://www.themedguru.com/20110415/newsfeature/tb-drug-open-source-drug-discovery-project-attracts-private-firms-86144384.html

SPICY IP; Lawyers prevent the open access to TKDL, Versus OSDD; April 5, 2011; Link: http://spicyipindia.blogspot.com/2011/04/lawyers-prevent-open-access-to-tkdl.html

Access Health International, Open Source Collaboration in Drug Discovery By Anand Tatambhotla; Link: http://accessh.org/index.php/list-of-existing-blogs/233

WittySparks, OSDD at center of Bioinformatics, Kerala; November 12, 2010; Youtube video; Link: http://videos.wittysparks.com/id/495129840 Videos regarding OSDD:- http://hidilli.com/videos/?vq=osdd&k=1

Stem Cells. Regenerative Medicine; Posted by HemantVerma , Thursday, April 8, 2010; April 13, 2010 Links:- http://vermahemant.blogspot.com/2010/04/open-source-drug-discovery.html

NetworkWorld ; Can Open Source Defeat the Scourge of Tuberculosis? ; By Alan Shimel on Tue, 04/13/10 Link:http://www.networkworld.com/community/node/60022

A blog by Science journalist Angela Saini; Nothing Shocks me I’m a scientist; March 29, 2010; Link: http://angelasaini.blogspot.com/2010/03/hunt-for-new-tb-drug_29.html

PILMAN - A Tapan Ray Website; Open Source Drug Discovery (OSDD) initiative for the tropical diseases by CSIR and cancer by GlaxoS; Posted by Tapan Ray on December 3, 2009; Link: http://www.tapanray.in/profiles/blogs/open-source-drug-discovery

Technology Review published by MIT; Blog: 2,000 scientists join OSDD to tackle TB; Posted By: Narayanan Suresh; November 2009; Link:http://www.technologyreview.com/biomedicine/24029/page1/

SPICY IP; OSDD still well on track; Posted By Swaraj Paul Barooah; Monday, November 30, 2009; Link: http://spicyipindia.blogspot.com/2009/11/osdd-still-well-on-track.html

Center for Global Development; "The Best Thing to Come Out of India Since “Slumdog Millionaire”. Posted By Scott Kniaz; March 11, 2009 Link:- http://blogs.cgdev.org/globalhealth/2009/03/the-best-thing-to-come-out-of.php

BioSaga Blog; Open Source Drug Discovery Initiative, OSDD is a CSIR Team India Consortium with Global Partnership; Monday 12 January 2009; Link: http://lukeskywaran.blogspot.com/2009/01/open-source-drug-discovery-initiative.html

Bio Saga: Just another WordPress.com weblog; Creating awareness of extremely resistant TB; By jkwaran; YouTube link: http://www.youtube.com/v/yj8KZNI6-W8&hl=en&fs=1 Link: http://lukeskywaran.wordpress.com/2010/09/07/creating-awareness-of-extremely-resistant-tb-2/

SPICY IP; SPICY IP Interview with Dr. Samir K Brahmachari; March 19, 2008; Link: http://spicyipindia.blogspot.com/2008/03/spicy-ip-interview-with-dr-samir-k.html

		OSDD_8pg.pdf View Download	OSDD Brochure January 2009	1291k	v. 1	Jul 2, 2009 1:46 AM	Domain Administrator
		OSDD Foundation day presentations View				Sep 22, 2011 4:50 AM	Anshu Bhardwaj
		OSDD.pdf View Download	Presentation on Open Source Drug Discovery (OSDD)	4367k	v. 1	Jul 2, 2009 3:32 AM	Anshu Bhardwaj
		OSDD_Update.pdf View Download	OSDD Update Volume1 Issue 1 2010	4176k	v. 1	Dec 15, 2010 9:47 PM	Vinod Scaria

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